J4_8CDL_008

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

8CDL|1|AA|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|C|2654
8CDL|1|AA|U|2655
8CDL|1|AA|A|2656
8CDL|1|AA|A|2657
8CDL|1|AA|G|2658
*
8CDL|1|AA|U|2712
8CDL|1|AA|U|2713
8CDL|1|AA|G|2714
*
8CDL|1|AA|C|2741
8CDL|1|AA|C|2742
*
8CDL|1|AA|G|2751
8CDL|1|AA|U|2752
8CDL|1|AA|G|2753

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain a

60S ribosomal protein L42-A