J4_8CDL_011
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8CDL|1|Cc|U|8, 8CDL|1|Cc|U|48, 8CDL|1|Cc|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CDL_011 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.2189
- The information below is about J4_7MRL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8CDL|1|Cc|G|7
8CDL|1|Cc|U|8
8CDL|1|Cc|G|9
8CDL|1|Cc|G|10
*
8CDL|1|Cc|C|26
8CDL|1|Cc|G|27
8CDL|1|Cc|U|28
*
8CDL|1|Cc|A|44
8CDL|1|Cc|A|45
8CDL|1|Cc|G|46
8CDL|1|Cc|G|47
8CDL|1|Cc|U|48
8CDL|1|Cc|C|49
8CDL|1|Cc|G|50
*
8CDL|1|Cc|C|66
8CDL|1|Cc|C|67
Current chains
- Chain Cc
- Transfer RNA fMet
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 60S ribosomal protein L42-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: