J4_8CDL_013

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UACAU*AUGCUUAAAAU*AUG*CGAA

Length

23 nucleotides

Bulged bases

8CDL|1|c|C|139, 8CDL|1|c|A|140, 8CDL|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|c|U|137
8CDL|1|c|A|138
8CDL|1|c|C|139
8CDL|1|c|A|140
8CDL|1|c|U|141
*
8CDL|1|c|A|173
8CDL|1|c|U|174
8CDL|1|c|G|175
8CDL|1|c|C|176
8CDL|1|c|U|177
8CDL|1|c|U|178
8CDL|1|c|A|179
8CDL|1|c|A|180
8CDL|1|c|A|181
8CDL|1|c|A|182
8CDL|1|c|U|183
*
8CDL|1|c|A|202
8CDL|1|c|U|203
8CDL|1|c|G|204
*
8CDL|1|c|C|263
8CDL|1|c|G|264
8CDL|1|c|A|265
8CDL|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A