J4_8CDR_007
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8CDR|1|AA|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CDR_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0768
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|AA|C|2192
8CDR|1|AA|U|2193
8CDR|1|AA|G|2194
*
8CDR|1|AA|C|2248
8CDR|1|AA|G|2249
*
8CDR|1|AA|C|2267
8CDR|1|AA|U|2268
8CDR|1|AA|U|2269
8CDR|1|AA|A|2270
8CDR|1|AA|A|2271
8CDR|1|AA|G|2272
8CDR|1|AA|G|2273
8CDR|1|AA|U|2274
8CDR|1|AA|A|2275
8CDR|1|AA|G|2276
*
8CDR|1|AA|U|2310
8CDR|1|AA|G|2311
8CDR|1|AA|A|2312
8CDR|1|AA|A|2313
8CDR|1|AA|U|2314
8CDR|1|AA|G|2315
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Bb
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain Z
- 60S ribosomal protein L41-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: