J4_8CDU_001

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8CDU|1|A|C|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDU|1|A|G|113
8CDU|1|A|A|114
8CDU|1|A|G|115
8CDU|1|A|U|116
8CDU|1|A|A|117
8CDU|1|A|A|118
8CDU|1|A|C|119
8CDU|1|A|A|120
8CDU|1|A|C|121
*
8CDU|1|A|G|246
8CDU|1|A|G|247
8CDU|1|A|C|248
*
8CDU|1|A|G|294
8CDU|1|A|U|295
8CDU|1|A|A|296
8CDU|1|A|G|297
*
8CDU|1|A|C|319
8CDU|1|A|C|320

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17