J4_8CDU_002

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GAUGGUU*AUAAAAG*CAC

Length

20 nucleotides

Bulged bases

8CDU|1|A|G|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDU|1|A|G|141
8CDU|1|A|A|142
8CDU|1|A|C|143
*
8CDU|1|A|G|177
8CDU|1|A|A|178
8CDU|1|A|U|179
8CDU|1|A|G|180
8CDU|1|A|G|181
8CDU|1|A|U|182
8CDU|1|A|U|183
*
8CDU|1|A|A|206
8CDU|1|A|U|207
8CDU|1|A|A|208
8CDU|1|A|A|209
8CDU|1|A|A|210
8CDU|1|A|A|211
8CDU|1|A|G|212
*
8CDU|1|A|C|227
8CDU|1|A|A|228
8CDU|1|A|C|229

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain S

30S ribosomal protein S20