J4_8CDU_003
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CGAAAGC*GCCGUAAACGAUG*CC
- Length
- 25 nucleotides
- Bulged bases
- 8CDU|1|A|G|585, 8CDU|1|A|U|822, 8CDU|1|A|C|826
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CDU_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.5703
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CDU|1|A|G|584
8CDU|1|A|G|585
8CDU|1|A|G|586
*
8CDU|1|A|C|773
8CDU|1|A|G|774
8CDU|1|A|A|775
8CDU|1|A|A|776
8CDU|1|A|A|777
8CDU|1|A|G|778
8CDU|1|A|C|779
*
8CDU|1|A|G|818
8CDU|1|A|C|819
8CDU|1|A|C|820
8CDU|1|A|G|821
8CDU|1|A|U|822
8CDU|1|A|A|823
8CDU|1|A|A|824
8CDU|1|A|A|825
8CDU|1|A|C|826
8CDU|1|A|G|827
8CDU|1|A|A|828
8CDU|1|A|U|829
8CDU|1|A|G|830
*
8CDU|1|A|C|889
8CDU|1|A|C|890
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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