J4_8CEH_010
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 8CEH|1|Bb|U|8, 8CEH|1|Bb|U|47, 8CEH|1|Bb|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CEH_010 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2883
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8CEH|1|Bb|U|7
8CEH|1|Bb|U|8
8CEH|1|Bb|A|9
8CEH|1|Bb|G|10
*
8CEH|1|Bb|C|25
8CEH|1|Bb|G|26
8CEH|1|Bb|C|27
*
8CEH|1|Bb|G|43
8CEH|1|Bb|A|44
8CEH|1|Bb|G|45
8CEH|1|Bb|G|46
8CEH|1|Bb|U|47
8CEH|1|Bb|C|48
8CEH|1|Bb|C|49
*
8CEH|1|Bb|G|65
8CEH|1|Bb|A|66
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- Elongation factor 2
- Chain MM
- 60S ribosomal protein L10
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain r
- 40S ribosomal protein S15
Coloring options: