J4_8CF5_007
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8CF5|1|AA|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CF5_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1376
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CF5|1|AA|C|2192
8CF5|1|AA|U|2193
8CF5|1|AA|G|2194
*
8CF5|1|AA|C|2248
8CF5|1|AA|G|2249
*
8CF5|1|AA|C|2267
8CF5|1|AA|U|2268
8CF5|1|AA|U|2269
8CF5|1|AA|A|2270
8CF5|1|AA|A|2271
8CF5|1|AA|G|2272
8CF5|1|AA|G|2273
8CF5|1|AA|U|2274
8CF5|1|AA|A|2275
8CF5|1|AA|G|2276
*
8CF5|1|AA|U|2310
8CF5|1|AA|G|2311
8CF5|1|AA|A|2312
8CF5|1|AA|A|2313
8CF5|1|AA|U|2314
8CF5|1|AA|G|2315
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain Z
- 60S ribosomal protein L41
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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