J4_8CF5_011
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8CF5|1|Cc|U|8, 8CF5|1|Cc|U|48, 8CF5|1|Cc|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CF5_011 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.2254
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8CF5|1|Cc|G|7
8CF5|1|Cc|U|8
8CF5|1|Cc|G|9
8CF5|1|Cc|G|10
*
8CF5|1|Cc|C|26
8CF5|1|Cc|G|27
8CF5|1|Cc|U|28
*
8CF5|1|Cc|A|44
8CF5|1|Cc|A|45
8CF5|1|Cc|G|46
8CF5|1|Cc|G|47
8CF5|1|Cc|U|48
8CF5|1|Cc|C|49
8CF5|1|Cc|G|50
*
8CF5|1|Cc|C|66
8CF5|1|Cc|C|67
Current chains
- Chain Cc
- Transfer RNA fMet
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 60S ribosomal protein L42-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- 40S ribosomal protein S18-A
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