J4_8CF5_013

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UACAU*AUGCUUAAAAU*AUG*CGAA

Length

23 nucleotides

Bulged bases

8CF5|1|c|C|139, 8CF5|1|c|A|140, 8CF5|1|c|U|178, 8CF5|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|c|U|137
8CF5|1|c|A|138
8CF5|1|c|C|139
8CF5|1|c|A|140
8CF5|1|c|U|141
*
8CF5|1|c|A|173
8CF5|1|c|U|174
8CF5|1|c|G|175
8CF5|1|c|C|176
8CF5|1|c|U|177
8CF5|1|c|U|178
8CF5|1|c|A|179
8CF5|1|c|A|180
8CF5|1|c|A|181
8CF5|1|c|A|182
8CF5|1|c|U|183
*
8CF5|1|c|A|202
8CF5|1|c|U|203
8CF5|1|c|G|204
*
8CF5|1|c|C|263
8CF5|1|c|G|264
8CF5|1|c|A|265
8CF5|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A