J4_8CGD_002

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGD_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0443

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8CGD|1|a|G|297
8CGD|1|a|G|298
8CGD|1|a|A|299
8CGD|1|a|A|300
8CGD|1|a|G|301
*
8CGD|1|a|C|316
8CGD|1|a|G|317
8CGD|1|a|C|318
8CGD|1|a|G|319
*
8CGD|1|a|C|323
8CGD|1|a|A|324
8CGD|1|a|G|325
*
8CGD|1|a|C|337
8CGD|1|a|G|338
8CGD|1|a|U|339
8CGD|1|a|A|340
8CGD|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24