J4_8CGD_008

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGD_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0402

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CGD|1|a|A|1772
8CGD|1|a|A|1773
8CGD|1|a|C|1774
8CGD|1|a|U|1775
8CGD|1|a|G|1776
*
8CGD|1|a|C|1788
8CGD|1|a|A|1789
8CGD|1|a|C|1790
8CGD|1|a|A|1791
8CGD|1|a|G|1792
*
8CGD|1|a|U|1827
8CGD|1|a|G|1828
8CGD|1|a|A|1829
8CGD|1|a|C|1830
*
8CGD|1|a|G|1975
8CGD|1|a|U|1976
8CGD|1|a|A|1977
8CGD|1|a|A|1978
8CGD|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2