J4_8CGK_005

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8CGK|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGK_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.033

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|G|1310
8CGK|1|a|G|1311
8CGK|1|a|U|1312
8CGK|1|a|U|1313
8CGK|1|a|C|1314
*
8CGK|1|a|G|1338
8CGK|1|a|G|1339
8CGK|1|a|U|1340
8CGK|1|a|G|1341
8CGK|1|a|A|1342
8CGK|1|a|G|1343
*
8CGK|1|a|C|1404
8CGK|1|a|U|1405
*
8CGK|1|a|A|1597
8CGK|1|a|A|1598
8CGK|1|a|U|1599
8CGK|1|a|C|1600
8CGK|1|a|G|1601
8CGK|1|a|U|1602
8CGK|1|a|A|1603
8CGK|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23