J4_8CGK_009

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8CGK|1|a|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGK_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0947

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8CGK|1|a|C|1833
8CGK|1|a|U|1834
8CGK|1|a|2MG|1835
*
8CGK|1|a|C|1905
8CGK|1|a|G|1906
*
8CGK|1|a|C|1924
8CGK|1|a|C|1925
8CGK|1|a|U|1926
8CGK|1|a|A|1927
8CGK|1|a|A|1928
8CGK|1|a|G|1929
8CGK|1|a|G|1930
8CGK|1|a|U|1931
8CGK|1|a|A|1932
8CGK|1|a|G|1933
*
8CGK|1|a|C|1967
8CGK|1|a|G|1968
8CGK|1|a|A|1969
8CGK|1|a|A|1970
8CGK|1|a|U|1971
8CGK|1|a|G|1972

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2