J4_8CGN_013

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UACAU*AUGCUUAAAA*UG*CGAA

Length

21 nucleotides

Bulged bases

8CGN|1|c|C|139, 8CGN|1|c|A|140, 8CGN|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|c|U|137
8CGN|1|c|A|138
8CGN|1|c|C|139
8CGN|1|c|A|140
8CGN|1|c|U|141
*
8CGN|1|c|A|173
8CGN|1|c|U|174
8CGN|1|c|G|175
8CGN|1|c|C|176
8CGN|1|c|U|177
8CGN|1|c|U|178
8CGN|1|c|A|179
8CGN|1|c|A|180
8CGN|1|c|A|181
8CGN|1|c|A|182
*
8CGN|1|c|U|203
8CGN|1|c|G|204
*
8CGN|1|c|C|263
8CGN|1|c|G|264
8CGN|1|c|A|265
8CGN|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A