J4_8CGV_005

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8CGV|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGV_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0346

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|G|1310
8CGV|1|a|G|1311
8CGV|1|a|U|1312
8CGV|1|a|U|1313
8CGV|1|a|C|1314
*
8CGV|1|a|G|1338
8CGV|1|a|G|1339
8CGV|1|a|U|1340
8CGV|1|a|G|1341
8CGV|1|a|A|1342
8CGV|1|a|G|1343
*
8CGV|1|a|C|1404
8CGV|1|a|U|1405
*
8CGV|1|a|A|1597
8CGV|1|a|A|1598
8CGV|1|a|U|1599
8CGV|1|a|C|1600
8CGV|1|a|G|1601
8CGV|1|a|U|1602
8CGV|1|a|A|1603
8CGV|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23