J4_8CRE_011

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CRE_011 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.0574

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CRE|1|AS|C|184
8CRE|1|AS|U|185
8CRE|1|AS|A|186
8CRE|1|AS|U|187
8CRE|1|AS|G|188
*
8CRE|1|AS|C|204
8CRE|1|AS|G|205
8CRE|1|AS|U|206
8CRE|1|AS|C|207
*
8CRE|1|AS|G|211
8CRE|1|AS|A|212
8CRE|1|AS|G|213
*
8CRE|1|AS|C|225
8CRE|1|AS|G|226
8CRE|1|AS|U|227
8CRE|1|AS|G|228
8CRE|1|AS|C|229
8CRE|1|AS|G|230

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24