J4_8CRE_016

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8CRE|1|AS|U|2292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CRE_016 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0347

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CRE|1|AS|C|2170
8CRE|1|AS|U|2171
8CRE|1|AS|G|2172
*
8CRE|1|AS|C|2226
8CRE|1|AS|G|2227
*
8CRE|1|AS|C|2245
8CRE|1|AS|U|2246
8CRE|1|AS|U|2247
8CRE|1|AS|A|2248
8CRE|1|AS|A|2249
8CRE|1|AS|G|2250
8CRE|1|AS|G|2251
8CRE|1|AS|U|2252
8CRE|1|AS|A|2253
8CRE|1|AS|G|2254
*
8CRE|1|AS|U|2288
8CRE|1|AS|G|2289
8CRE|1|AS|A|2290
8CRE|1|AS|A|2291
8CRE|1|AS|U|2292
8CRE|1|AS|G|2293

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CI

60S ribosomal protein L41

Chain CM

Small subunit ribosomal RNA; SSU rRNA