3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
8CRE|1|CM|A|357
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8CRE|1|CM|C|99
8CRE|1|CM|A|100
8CRE|1|CM|U|101
8CRE|1|CM|U|102
8CRE|1|CM|A|103
8CRE|1|CM|A|104
8CRE|1|CM|A|105
8CRE|1|CM|U|106
8CRE|1|CM|C|107
*
8CRE|1|CM|G|305
8CRE|1|CM|C|306
8CRE|1|CM|C|307
*
8CRE|1|CM|G|355
8CRE|1|CM|U|356
8CRE|1|CM|A|357
8CRE|1|CM|A|358
8CRE|1|CM|C|359
*
8CRE|1|CM|G|381
8CRE|1|CM|G|382

Current chains

Chain CM
18S

Nearby chains

Chain CR
40S ribosomal protein S4
Chain CV
40S ribosomal protein S8
Chain CY
40S ribosomal protein S11A
Chain DK
Ribosomal protein S23 (S12)

Coloring options:

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