J4_8CST_003

3D structure

PDB id

8CST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

8CST|1|A|A|942, 8CST|1|A|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CST_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.2022

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8CST|1|A|G|941
8CST|1|A|A|942
8CST|1|A|G|943
*
8CST|1|A|C|1052
8CST|1|A|A|1053
8CST|1|A|A|1054
8CST|1|A|U|1055
8CST|1|A|A|1056
8CST|1|A|G|1057
*
8CST|1|A|C|1098
8CST|1|A|C|1099
8CST|1|A|C|1100
8CST|1|A|U|1101
8CST|1|A|A|1102
8CST|1|A|A|1103
8CST|1|A|A|1104
8CST|1|A|C|1105
8CST|1|A|C|1106
8CST|1|A|U|1107
8CST|1|A|C|1108
8CST|1|A|A|1109
*
8CST|1|A|U|1132
8CST|1|A|C|1133

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 6

Putative ribosome-binding factor A, mitochondrial

Chain I

28S ribosomal protein S11, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial