J4_8CVK_018

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVK_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0776

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8CVK|1|2A|C|297
8CVK|1|2A|G|298
8CVK|1|2A|A|299
8CVK|1|2A|A|300
8CVK|1|2A|G|301
*
8CVK|1|2A|C|316
8CVK|1|2A|G|317
8CVK|1|2A|C|318
8CVK|1|2A|C|319
*
8CVK|1|2A|G|323
8CVK|1|2A|A|324
8CVK|1|2A|G|325
*
8CVK|1|2A|C|337
8CVK|1|2A|G|338
8CVK|1|2A|U|339
8CVK|1|2A|A|340
8CVK|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24