J4_8CVK_022

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GACC*GGC*GG*CC

Length

11 nucleotides

Bulged bases

8CVK|1|2A|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2A|G|1444
8CVK|1|2A|A|1445
8CVK|1|2A|C|1445|||A
8CVK|1|2A|C|1446
*
8CVK|1|2A|G|1465
8CVK|1|2A|G|1466
8CVK|1|2A|C|1467
*
8CVK|1|2A|G|1525
8CVK|1|2A|G|1526
*
8CVK|1|2A|C|1546
8CVK|1|2A|C|1547

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains