J4_8CVL_024

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

8CVL|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVL_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0603

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8CVL|1|2A|U|1833
8CVL|1|2A|U|1834
8CVL|1|2A|G|1835
*
8CVL|1|2A|C|1905
8CVL|1|2A|G|1906
*
8CVL|1|2A|C|1924
8CVL|1|2A|C|1925
8CVL|1|2A|U|1926
8CVL|1|2A|A|1927
8CVL|1|2A|A|1928
8CVL|1|2A|G|1929
8CVL|1|2A|G|1930
8CVL|1|2A|U|1931
8CVL|1|2A|A|1932
8CVL|1|2A|G|1933
*
8CVL|1|2A|C|1967
8CVL|1|2A|G|1968
8CVL|1|2A|A|1969
8CVL|1|2A|A|1970
8CVL|1|2A|A|1971
8CVL|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA