J4_8E32_002

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E32_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0858

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8E32|1|I|G|297
8E32|1|I|G|298
8E32|1|I|A|299
8E32|1|I|A|300
8E32|1|I|G|301
*
8E32|1|I|C|316
8E32|1|I|G|317
8E32|1|I|C|318
8E32|1|I|G|319
*
8E32|1|I|C|323
8E32|1|I|A|324
8E32|1|I|G|325
*
8E32|1|I|C|337
8E32|1|I|G|338
8E32|1|I|U|339
8E32|1|I|A|340
8E32|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4