3D structure

PDB id
8E32 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
8E32|1|I|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8E32_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.1058
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8E32|1|I|G|1310
8E32|1|I|G|1311
8E32|1|I|U|1312
8E32|1|I|U|1313
8E32|1|I|C|1314
*
8E32|1|I|G|1338
8E32|1|I|G|1339
8E32|1|I|U|1340
8E32|1|I|G|1341
8E32|1|I|A|1342
8E32|1|I|G|1343
*
8E32|1|I|C|1404
8E32|1|I|U|1405
*
8E32|1|I|A|1597
8E32|1|I|A|1598
8E32|1|I|U|1599
8E32|1|I|C|1600
8E32|1|I|G|1601
8E32|1|I|U|1602
8E32|1|I|A|1603
8E32|1|I|C|1604

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L34

Coloring options:


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