J4_8E36_005

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8E36|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E36_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0616

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8E36|1|I|G|1310
8E36|1|I|G|1311
8E36|1|I|U|1312
8E36|1|I|U|1313
8E36|1|I|C|1314
*
8E36|1|I|G|1338
8E36|1|I|G|1339
8E36|1|I|U|1340
8E36|1|I|G|1341
8E36|1|I|A|1342
8E36|1|I|G|1343
*
8E36|1|I|C|1404
8E36|1|I|U|1405
*
8E36|1|I|A|1597
8E36|1|I|A|1598
8E36|1|I|U|1599
8E36|1|I|C|1600
8E36|1|I|G|1601
8E36|1|I|U|1602
8E36|1|I|A|1603
8E36|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34