3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8E43_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1495
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

8E43|1|I|C|601
8E43|1|I|A|602
8E43|1|I|A|603
8E43|1|I|G|604
*
8E43|1|I|C|624
8E43|1|I|G|625
8E43|1|I|A|626
8E43|1|I|A|627
8E43|1|I|G|628
*
8E43|1|I|C|635
8E43|1|I|G|636
8E43|1|I|A|637
8E43|1|I|G|638
*
8E43|1|I|C|650
8E43|1|I|G|651
8E43|1|I|U|652
8E43|1|I|U|653
8E43|1|I|A|654
8E43|1|I|A|655
8E43|1|I|G|656

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L4

Coloring options:


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