3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
8E43|1|I|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8E43_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0673
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8E43|1|I|G|1310
8E43|1|I|G|1311
8E43|1|I|U|1312
8E43|1|I|U|1313
8E43|1|I|C|1314
*
8E43|1|I|G|1338
8E43|1|I|G|1339
8E43|1|I|U|1340
8E43|1|I|G|1341
8E43|1|I|A|1342
8E43|1|I|G|1343
*
8E43|1|I|C|1404
8E43|1|I|U|1405
*
8E43|1|I|A|1597
8E43|1|I|A|1598
8E43|1|I|U|1599
8E43|1|I|C|1600
8E43|1|I|G|1601
8E43|1|I|U|1602
8E43|1|I|A|1603
8E43|1|I|C|1604

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L34

Coloring options:


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