J4_8E43_009

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8E43|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E43_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1367

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8E43|1|I|C|1833
8E43|1|I|U|1834
8E43|1|I|2MG|1835
*
8E43|1|I|C|1905
8E43|1|I|G|1906
*
8E43|1|I|C|1924
8E43|1|I|C|1925
8E43|1|I|U|1926
8E43|1|I|A|1927
8E43|1|I|A|1928
8E43|1|I|G|1929
8E43|1|I|G|1930
8E43|1|I|U|1931
8E43|1|I|A|1932
8E43|1|I|G|1933
*
8E43|1|I|C|1967
8E43|1|I|G|1968
8E43|1|I|A|1969
8E43|1|I|A|1970
8E43|1|I|U|1971
8E43|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2