J4_8E44_002
3D structure
- PDB id
- 8E44 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to antibiotic analog SLC09
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8E44_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0467
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8E44|1|I|G|297
8E44|1|I|G|298
8E44|1|I|A|299
8E44|1|I|A|300
8E44|1|I|G|301
*
8E44|1|I|C|316
8E44|1|I|G|317
8E44|1|I|C|318
8E44|1|I|G|319
*
8E44|1|I|C|323
8E44|1|I|A|324
8E44|1|I|G|325
*
8E44|1|I|C|337
8E44|1|I|G|338
8E44|1|I|U|339
8E44|1|I|A|340
8E44|1|I|C|341
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
Coloring options: