J4_8E44_009

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8E44|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E44_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1301

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8E44|1|I|C|1833
8E44|1|I|U|1834
8E44|1|I|2MG|1835
*
8E44|1|I|C|1905
8E44|1|I|G|1906
*
8E44|1|I|C|1924
8E44|1|I|C|1925
8E44|1|I|U|1926
8E44|1|I|A|1927
8E44|1|I|A|1928
8E44|1|I|G|1929
8E44|1|I|G|1930
8E44|1|I|U|1931
8E44|1|I|A|1932
8E44|1|I|G|1933
*
8E44|1|I|C|1967
8E44|1|I|G|1968
8E44|1|I|A|1969
8E44|1|I|A|1970
8E44|1|I|U|1971
8E44|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2