J4_8E46_002

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E46_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0802

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8E46|1|I|G|297
8E46|1|I|G|298
8E46|1|I|A|299
8E46|1|I|A|300
8E46|1|I|G|301
*
8E46|1|I|C|316
8E46|1|I|G|317
8E46|1|I|C|318
8E46|1|I|G|319
*
8E46|1|I|C|323
8E46|1|I|A|324
8E46|1|I|G|325
*
8E46|1|I|C|337
8E46|1|I|G|338
8E46|1|I|U|339
8E46|1|I|A|340
8E46|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4