J4_8E48_002

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E48_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1085

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8E48|1|I|G|297
8E48|1|I|G|298
8E48|1|I|A|299
8E48|1|I|A|300
8E48|1|I|G|301
*
8E48|1|I|C|316
8E48|1|I|G|317
8E48|1|I|C|318
8E48|1|I|G|319
*
8E48|1|I|C|323
8E48|1|I|A|324
8E48|1|I|G|325
*
8E48|1|I|C|337
8E48|1|I|G|338
8E48|1|I|U|339
8E48|1|I|A|340
8E48|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4