J4_8E48_005

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGUUC*GGUGAG*CUUGGUGUU*AACAUCAAAUCGUAC

Length

35 nucleotides

Bulged bases

8E48|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|I|G|1310
8E48|1|I|G|1311
8E48|1|I|U|1312
8E48|1|I|U|1313
8E48|1|I|C|1314
*
8E48|1|I|G|1338
8E48|1|I|G|1339
8E48|1|I|U|1340
8E48|1|I|G|1341
8E48|1|I|A|1342
8E48|1|I|G|1343
*
8E48|1|I|C|1404
8E48|1|I|U|1405
8E48|1|I|U|1406
8E48|1|I|G|1407
8E48|1|I|G|1408
8E48|1|I|U|1409
8E48|1|I|G|1410
8E48|1|I|U|1411
8E48|1|I|U|1412
*
8E48|1|I|A|1590
8E48|1|I|A|1591
8E48|1|I|C|1592
8E48|1|I|A|1593
8E48|1|I|U|1594
8E48|1|I|C|1595
8E48|1|I|A|1596
8E48|1|I|A|1597
8E48|1|I|A|1598
8E48|1|I|U|1599
8E48|1|I|C|1600
8E48|1|I|G|1601
8E48|1|I|U|1602
8E48|1|I|A|1603
8E48|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34