J4_8E48_009

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8E48|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E48_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1744

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8E48|1|I|C|1833
8E48|1|I|U|1834
8E48|1|I|2MG|1835
*
8E48|1|I|C|1905
8E48|1|I|G|1906
*
8E48|1|I|C|1924
8E48|1|I|C|1925
8E48|1|I|U|1926
8E48|1|I|A|1927
8E48|1|I|A|1928
8E48|1|I|G|1929
8E48|1|I|G|1930
8E48|1|I|U|1931
8E48|1|I|A|1932
8E48|1|I|G|1933
*
8E48|1|I|C|1967
8E48|1|I|G|1968
8E48|1|I|A|1969
8E48|1|I|A|1970
8E48|1|I|U|1971
8E48|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2