J4_8E49_009

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8E49|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E49_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1264

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8E49|1|I|C|1833
8E49|1|I|U|1834
8E49|1|I|2MG|1835
*
8E49|1|I|C|1905
8E49|1|I|G|1906
*
8E49|1|I|C|1924
8E49|1|I|C|1925
8E49|1|I|U|1926
8E49|1|I|A|1927
8E49|1|I|A|1928
8E49|1|I|G|1929
8E49|1|I|G|1930
8E49|1|I|U|1931
8E49|1|I|A|1932
8E49|1|I|G|1933
*
8E49|1|I|C|1967
8E49|1|I|G|1968
8E49|1|I|A|1969
8E49|1|I|A|1970
8E49|1|I|U|1971
8E49|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2