J4_8EIU_007

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EIU_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0478

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8EIU|1|a|G|297
8EIU|1|a|G|298
8EIU|1|a|A|299
8EIU|1|a|A|300
8EIU|1|a|G|301
*
8EIU|1|a|C|316
8EIU|1|a|G|317
8EIU|1|a|C|318
8EIU|1|a|G|319
*
8EIU|1|a|C|323
8EIU|1|a|A|324
8EIU|1|a|G|325
*
8EIU|1|a|C|337
8EIU|1|a|G|338
8EIU|1|a|U|339
8EIU|1|a|A|340
8EIU|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24