J4_8EIU_010

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8EIU|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EIU_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0439

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EIU|1|a|G|1310
8EIU|1|a|G|1311
8EIU|1|a|U|1312
8EIU|1|a|U|1313
8EIU|1|a|C|1314
*
8EIU|1|a|G|1338
8EIU|1|a|G|1339
8EIU|1|a|U|1340
8EIU|1|a|G|1341
8EIU|1|a|A|1342
8EIU|1|a|G|1343
*
8EIU|1|a|C|1404
8EIU|1|a|U|1405
*
8EIU|1|a|A|1597
8EIU|1|a|A|1598
8EIU|1|a|U|1599
8EIU|1|a|C|1600
8EIU|1|a|G|1601
8EIU|1|a|U|1602
8EIU|1|a|A|1603
8EIU|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23