J4_8EKC_002
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EKC_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0878
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8EKC|1|A|G|297
8EKC|1|A|G|298
8EKC|1|A|A|299
8EKC|1|A|A|300
8EKC|1|A|G|301
*
8EKC|1|A|C|316
8EKC|1|A|G|317
8EKC|1|A|C|318
8EKC|1|A|G|319
*
8EKC|1|A|C|323
8EKC|1|A|A|324
8EKC|1|A|G|325
*
8EKC|1|A|C|337
8EKC|1|A|G|338
8EKC|1|A|U|339
8EKC|1|A|A|340
8EKC|1|A|C|341
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain W
- 50S ribosomal protein L24
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