J4_8EKC_005

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8EKC|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EKC_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1011

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EKC|1|A|G|1310
8EKC|1|A|G|1311
8EKC|1|A|U|1312
8EKC|1|A|U|1313
8EKC|1|A|C|1314
*
8EKC|1|A|G|1338
8EKC|1|A|G|1339
8EKC|1|A|U|1340
8EKC|1|A|G|1341
8EKC|1|A|A|1342
8EKC|1|A|G|1343
*
8EKC|1|A|C|1404
8EKC|1|A|U|1405
*
8EKC|1|A|A|1597
8EKC|1|A|A|1598
8EKC|1|A|U|1599
8EKC|1|A|C|1600
8EKC|1|A|G|1601
8EKC|1|A|U|1602
8EKC|1|A|A|1603
8EKC|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23