J4_8EMM_004
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8EMM|1|Y|U|8, 8EMM|1|Y|U|47, 8EMM|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EMM_004 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.198
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8EMM|1|Y|G|7
8EMM|1|Y|U|8
8EMM|1|Y|G|9
8EMM|1|Y|G|10
*
8EMM|1|Y|C|25
8EMM|1|Y|G|26
8EMM|1|Y|U|27
*
8EMM|1|Y|A|43
8EMM|1|Y|A|44
8EMM|1|Y|G|45
8EMM|1|Y|G|46
8EMM|1|Y|U|47
8EMM|1|Y|C|48
8EMM|1|Y|G|49
*
8EMM|1|Y|C|65
8EMM|1|Y|C|66
Current chains
- Chain Y
- Met-NH-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: