J4_8EMM_007

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EMM_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0509

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8EMM|1|a|G|297
8EMM|1|a|G|298
8EMM|1|a|A|299
8EMM|1|a|A|300
8EMM|1|a|G|301
*
8EMM|1|a|C|316
8EMM|1|a|G|317
8EMM|1|a|C|318
8EMM|1|a|G|319
*
8EMM|1|a|C|323
8EMM|1|a|A|324
8EMM|1|a|G|325
*
8EMM|1|a|C|337
8EMM|1|a|G|338
8EMM|1|a|U|339
8EMM|1|a|A|340
8EMM|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24