J4_8EV6_024

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

8EV6|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EV6_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.071

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8EV6|1|2A|U|1833
8EV6|1|2A|U|1834
8EV6|1|2A|G|1835
*
8EV6|1|2A|C|1905
8EV6|1|2A|G|1906
*
8EV6|1|2A|C|1924
8EV6|1|2A|C|1925
8EV6|1|2A|U|1926
8EV6|1|2A|A|1927
8EV6|1|2A|A|1928
8EV6|1|2A|G|1929
8EV6|1|2A|G|1930
8EV6|1|2A|U|1931
8EV6|1|2A|A|1932
8EV6|1|2A|G|1933
*
8EV6|1|2A|C|1967
8EV6|1|2A|G|1968
8EV6|1|2A|A|1969
8EV6|1|2A|A|1970
8EV6|1|2A|A|1971
8EV6|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA