J4_8EVS_008
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8EVS|1|A1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EVS_008 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.062
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVS|1|A1|C|2654
8EVS|1|A1|U|2655
8EVS|1|A1|A|2656
8EVS|1|A1|A|2657
8EVS|1|A1|G|2658
*
8EVS|1|A1|U|2712
8EVS|1|A1|U|2713
8EVS|1|A1|G|2714
8EVS|1|A1|A|2715
8EVS|1|A1|U|2716
*
8EVS|1|A1|A|2740
8EVS|1|A1|C|2741
8EVS|1|A1|C|2742
*
8EVS|1|A1|G|2751
8EVS|1|A1|U|2752
8EVS|1|A1|G|2753
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- RPL5 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: