J4_8FC1_021

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

8FC1|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC1_021 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.047

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8FC1|1|2A|U|1833
8FC1|1|2A|U|1834
8FC1|1|2A|G|1835
*
8FC1|1|2A|C|1905
8FC1|1|2A|G|1906
*
8FC1|1|2A|C|1924
8FC1|1|2A|C|1925
8FC1|1|2A|U|1926
8FC1|1|2A|A|1927
8FC1|1|2A|A|1928
8FC1|1|2A|G|1929
8FC1|1|2A|G|1930
8FC1|1|2A|U|1931
8FC1|1|2A|A|1932
8FC1|1|2A|G|1933
*
8FC1|1|2A|C|1967
8FC1|1|2A|G|1968
8FC1|1|2A|A|1969
8FC1|1|2A|A|1970
8FC1|1|2A|A|1971
8FC1|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA