3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
8FC5|1|2A|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FC5_021 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0531
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8FC5|1|2A|U|1833
8FC5|1|2A|U|1834
8FC5|1|2A|G|1835
*
8FC5|1|2A|C|1905
8FC5|1|2A|G|1906
*
8FC5|1|2A|C|1924
8FC5|1|2A|C|1925
8FC5|1|2A|U|1926
8FC5|1|2A|A|1927
8FC5|1|2A|A|1928
8FC5|1|2A|G|1929
8FC5|1|2A|G|1930
8FC5|1|2A|U|1931
8FC5|1|2A|A|1932
8FC5|1|2A|G|1933
*
8FC5|1|2A|C|1967
8FC5|1|2A|G|1968
8FC5|1|2A|A|1969
8FC5|1|2A|A|1970
8FC5|1|2A|A|1971
8FC5|1|2A|A|1972

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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