J4_8FC6_015

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC6_015 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0618

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8FC6|1|2A|C|297
8FC6|1|2A|G|298
8FC6|1|2A|A|299
8FC6|1|2A|A|300
8FC6|1|2A|G|301
*
8FC6|1|2A|C|316
8FC6|1|2A|G|317
8FC6|1|2A|C|318
8FC6|1|2A|C|319
*
8FC6|1|2A|G|323
8FC6|1|2A|A|324
8FC6|1|2A|G|325
*
8FC6|1|2A|C|337
8FC6|1|2A|G|338
8FC6|1|2A|U|339
8FC6|1|2A|A|340
8FC6|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24