J4_8FIZ_006

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8FIZ|1|BA|U|653, 8FIZ|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FIZ_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2809

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|C|601
8FIZ|1|BA|A|602
8FIZ|1|BA|A|603
8FIZ|1|BA|G|604
*
8FIZ|1|BA|C|624
8FIZ|1|BA|G|625
8FIZ|1|BA|A|626
8FIZ|1|BA|A|627
8FIZ|1|BA|G|628
*
8FIZ|1|BA|C|635
8FIZ|1|BA|G|636
8FIZ|1|BA|A|637
8FIZ|1|BA|G|638
*
8FIZ|1|BA|C|650
8FIZ|1|BA|G|651
8FIZ|1|BA|U|652
8FIZ|1|BA|U|653
8FIZ|1|BA|A|654
8FIZ|1|BA|A|655
8FIZ|1|BA|G|656

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L35

Chain BT

50S ribosomal protein L15