J4_8FKR_002

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8FKR|1|L3|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKR|1|L3|C|196
8FKR|1|L3|A|197
8FKR|1|L3|A|198
8FKR|1|L3|G|199
*
8FKR|1|L3|C|215
8FKR|1|L3|C|216
8FKR|1|L3|C|217
8FKR|1|L3|A|218
8FKR|1|L3|G|219
8FKR|1|L3|C|220
8FKR|1|L3|C|221
8FKR|1|L3|C|222
*
8FKR|1|L3|G|226
8FKR|1|L3|A|227
8FKR|1|L3|C|228
*
8FKR|1|L3|G|240
8FKR|1|L3|G|241
8FKR|1|L3|U|242
8FKR|1|L3|A|243
8FKR|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain NQ

WD repeat-containing protein 74

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16